jelman Goto Github PK

amico_container

Signularity container for AMICO NODDI

baracus

cognitive_domains

cognitivedomains_praceffecadj

Create VETSA cognitive domains from practice effect corrected data

connectivity

tools for connectivity analysis

dst

Hold various processing and analysis scripts for the DST project

fsl_fix

FMRIB's ICA-based Xnoiseifier

fslnets

python wrap of fslnets

gift_analysis

Set of scripts to operate on GIFT output

lakcluster_c

lc_marking

metaxcan

MetaXcan software and manuscript

misc

misc functions and scripts

pathwayprs_paper

Code used in the manuscript investigating associations between pathway-specific PRS and ATN biomarkers

pe_manuscript

Practice effects manuscript

pe_mci_vetsa3

Code to generate practice effect corrected data for VETSA 3 MCI diagnosis

pna-notebooks

Notebooks for the Berkeley course on practical neuroimaging

pna-utils

Utilities for practical neuroimaging analysis class

practice_effects_vetsa

pupalz

Code for the PupAlz study

pupil_ax-cpt

pupil_rt

pupillometry

Scripts to process pupillometry data

quickgit-lab

Quick Git Tutorial for the lab

roi_connectivity

Basic functional connectivity on ROI timecourses

rsfmri_pib

Misc scripts from study examining relationship between PIB and rs-fmri

skm_cluster

scripts to run sparse k-means clustering with resampling in order to create PIB+ and PIB- groups

twinmodels

vetsa2bids

Scripts to convert VETSA MRI data to BIDS format

vetsa_pupillometry

Pupillometry scripts for VETSA project