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jereiard's Projects

bamsurgeon icon bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

deepvariant icon deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dv-trio icon dv-trio

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

freenas-iocage-nextcloud icon freenas-iocage-nextcloud

Script to create an iocage jail on FreeNAS for the latest Nextcloud 28 release, including Caddy, MariaDB or PostgreSQL, and Let's Encrypt

jupyterhub-cuda icon jupyterhub-cuda

A docker compose of jupyterhub + CUDA 12.4 + PyTorch + Tensorflow with conda

kiwitalk icon kiwitalk

An UNOFFICIAL cross-platform KakaoTalk client written in TypeScript & Rust (SolidJS, tauri)

tui.editor icon tui.editor

🍞📝 Markdown WYSIWYG Editor. GFM Standard + Chart & UML Extensible.

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