jeremypike Goto Github PK

2024-04-29-birmingham

assorted-imagej-scripts

This repo contains various ImageJ and ImageJ2 scripts for a variety of applications

assorted-matlab-scripts

This repository contains various Matlab scripts for a variety of applications.

cell-classification

colocalizationstudio-modified

A simple extension of Thibault Lagache's plugin to enable script use

csbdeep

Image restoration for fluorescence microscopy

expansion-analysis

Analysis scripts for Faulkner et al. (2021) - Imaging Nanoscale Nuclear Structures with Expansion Microscopy.

first-imagej-command

This is an test plugin for experimentation with ImageJ commands and ops.

ilastik-batch-clustering

Fiji macro for batch ilastik processing

image-analysis-with-fiji

Introductory image analysis course using Fiji

image-processing

Image Processing with Python

intermediate-image-analysis

Practical image analysis course using a range of leading open source software

lls-preprocess

Preprocessing of LLS data

nuclear-tissue-analysis

ROI based analysis of tissue sections

platelet-segmentation

Analysis workflow for characterization of platelet spreading and morphology

plateletcalculations

Notebook for surface area calculations

ppn2v

Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"

receptor-trafficking-toolbox

Matlab toolbox to quantify receptor trafficking and colocalization

rsmlm

R package for analysis of single molecule localization microscopy (SMLM) data

rsmlm-tutorials

Binder ready tutorial and demos for RSMLM

satellite-analysis

Command implementing counting and spatial analysis of nuclei, centrosomes and satellite proteins

scs-cell-tracking

simple-threshold

test plugin for Dais learnathon

spair_pytorch

pytorch implementation of Spatially Invariant Unsupervised Object Detection with VAE

tutorialbigdataviewer

BDV and Caching tutorial for the DAIS Learnathon 2017

usiigaci

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning