Comments (1)
MAPseq will not report any result for a sequence if it does not find any hit with an alignment score higher or equal to 30. You can reduce this limit by using the --minscore argument to MAPseq. If you are sure those 200 sequences should match sequences that are found in your database (for example you get a high scoring alignment using another program such as BLAST, usearch or vsearch) then if you can provide me with the reference and query you are using I can investigate it further.
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Related Issues (20)
- How to define the cutoff values in the taxonomy file? HOT 1
- Missing newline on EOF causes last sequence to be ignored HOT 8
- Mac executable HOT 3
- README update HOT 1
- Installation error HOT 2
- Installation Issue #2 HOT 1
- Is v 1.2.5 going to be released as package? HOT 2
- Didn't find binary package file and libeutills-1.0.so error HOT 2
- Installation problems HOT 3
- Visualization with Krona HOT 6
- Missing db fasta file HOT 1
- Run with third-party taxonomy db HOT 6
- Add MAPseq to bioconda HOT 2
- 14922 sequences not found in sequence database HOT 1
- otutable limited to taxonomy level 3 HOT 1
- no -outfmt "simple" in v2.0.1alpha
- Segmentation fault when using '-otutable' HOT 5
- Different outputs
- MapSeq takes too long in file clustering
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