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2019-datascience-homeworks

2019-datascience-lectures

Lecture content for 2019 course.

accel

A Golang library for calculating derivatives from empirical data with Loess smoothing.

assembly_methods

Notes for various approaches to de novo genome assembly

berkeley-softfloat-2

Berkeley Softfloat 2c - with updates

bs

A method for winning at the card game "Bullshit"

bython

Python with braces. Because python is awesome, but whitespace is awful.

c_columbae_genome

Genome and annotation files for C. columbae

cc65

cc65 - a freeware C compiler for 6502 based systems -

cc65_softfloat2

A port of Berkeley Softfloat to the cc65 compiler for use on 6502 architectures

cgo-example

A simple CGO application for example purposes.

cmd-utils

Linux command line utilities

convm

Golang convenience functions for converting multiple strings

cooler_boundaries

Tools to extract and compare TAD boundaries from cooler's .cool files

covplots

Genomics plotting tools for Hi-C and Illumina data

csvh

Helper functions for handling CSVs in golang

cut_and_mask

Tools cutting and masking genomes, and for altering coordinates of files associated with those genomes.

cvtk

dice_roller

A dice rolling language written in Bison to learn about parser generators

exp_eco_evo

Simple wright-fisher-style evolutionary ecology simulator

fastats

Golang library and command line tools for handling genome sequence data types

fasttsv

Extremely fast reading and writing of TSVs in Go

fdlibm

Math library

fthresh

Thresholding software for qqplot-thresholded fst statistics

fuse-bgzip

game_solver

A look-ahead minmax AI that solves a simple game. Can adjust number of available moves and amount of lookahead.

gcc-6502-bits

Build tools, tiny C library, etc. for gcc-6502 port.

geneview

A python package for genomics data visualization by using matplotlib

gggenes_plot

Plot gffs, bedgraphs, and snps using gggenes

git_shorts

Simple command line shortcuts for the most-used git commands