jhawe Goto Github PK
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jhawe's Projects
archs4_loader
Collection of scripts for conveniently downloading data from the archs4 resource
bggm
Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine
chipseq_pipeline
A snakemake ChIP-seq pipeline allowing IDR analysis
common
Collection of some scripts which could potentially be used in multiple projects
dosdungeon
encode_cellline_mapping
gameoflife
irafnet_custom
A custom version of the iRafNet package by Petralia et al.
jhawe.github.io
krefting-patients
meqtl-figures
Scripts formain some of the main figures created for the Hawe et al. 2022 meQTL paper.
ngs-scripts
A collection (at some point...) of scripts to process/analyze NGS data
r
A collection of convenient R scripts
r-visualization-intro
A brief introduction to data visualization in R
rpeer
conda env to install R-based PEER for factor analysis
rstudio-charliecloud
Dockerfile and some scripts/infos to make Rstudio server work with charliecloud containers
tensorqtl
Ultrafast GPU-based QTL mapper
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