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followers: 67.0 following: 0.0 repos: 138.0 gists: 17.0

Name: Josh Cook

Type: User

Company: Vertex Pharmaceuticals

Bio: B.S. in Biology 🔬 and Chemistry 🧪 Ph.D. in Computational Biology 💻 Computational Genomics Research Scientist at Vertex Pharmaceuticals 💊

Twitter: JoshDoesA

Location: Boston, MA, USA

Blog: https://joshuacook.netlify.app/

Joshua Cook

Computational genomics researcher at Vertex Pharmaceuticals.

For more information about myself, interests, and hobbies, checkout my website, CV, or resume (updates and tailored resumes coming soon). Feel free to get in touch!

👨🏻‍💻 Projects

Currently, I'm working on the 2023 Advent of Code in my attempt to learn the Rust programming language.

To learn new skills and play with fun tools, I have worked on a variety of personal side-projects including

building a web API, web interface, and SwiftBar plugin for tracking my coffee consumption,
a comparison of ML methods for summarizing scientific articles,
experimenting with and packaging the 'tumoroscope' model in PyMC (a probabilistic programming language in Python for building Bayesian models and performing MCMC),
and a R package 'mustashe' for intelligently caching computed results.

I've also made small contributions to other projects such as snakemake and the Fig autocomplete repository.

📝 Most recent blogs posts

All of my blog posts can be found here.

📞 Connect with me

💸 Support me

Josh Cook's Projects

100-days-of-rust

Learning the Rust programming language with 100 continuous days of practice.

100daysofpython

100 days, at least 1 hour a day, of learning the Python programming language.

100daysofswift

100 days, at least 1 hour a day, of learning the Swift programming language.

100daysofswift2

100 days, at least 1 hour a day, of learning the Swift programming language.

a-concise-introduction-to-pure-mathematics

My notes on *A Concise Introduction to Pure Mathematics* (4th ed.)

academic-kickstart

Personal website made user Academic & Hugo, hosted on Netlify

adv-r

Advanced R: a book

advent-of-code-2022-rust

Advent of Code 2022 solutions in Rust

advent-of-code-2023-rust

My solutions to Advent of Code 2023 (in Rust).

advent-of-code_2019

Advent of Code 2019 in Python

advent-of-code_2020

Advent of Code for the Christmas of 2020

advent-of-code_2021

Advent of Code 2021 (with Python)

advent-of-code_2022

My solutions to Advent of Code 2022 (in Python).

alerts-and-pickers

Advanced usage of UIAlertController and pickers based on it: Telegram, Contacts, Location, PhotoLibrary, Country, Phone Code, Currency, Date...

an-introduction-to-statistical-learning

My notes on the book "An Introduction to Statistical Learning: with Applications in R."

applewatchcommunicationapp

An iOS app and WatOS app extension to experiment with data transfer and communication.

artificalplantlights-v2

An LED-based, Arduino controlled, artificial plant lighting system.

autocomplete

Fig adds autocomplete to your terminal.

awesome-advent-of-code

A collection of awesome resources related to the yearly Advent of Code challenge.

awesome-appwrite

Carefully curated list of awesome Appwrite resources 💪

awesome-streamlit

The purpose of this project is to share knowledge on how awesome Streamlit is and can be

bayesian-analysis-with-python_e2

My notes on "Bayesian Analysis with Python" (edition 2) by Osvaldo Martin.

bayesian-data-analysis-course

My notes and work for the Bayesian Data Analysis course taught by Aki Vehtari.

bayesian-statistics-the-fun-way-notes

Notes on the book "Bayesian Statistics the Fun Way" by Will Kurt

bda-course-proj

My final project for the Bayesian Data Analysis course.

bda_course_aalto

Bayesian Data Analysis course at Aalto

bookshelf-scanner

boston311

Python package for interfacing with Boston 311 API.

breatheanimation

My attempt at mimicing the animation in the Apple Watch Breathe application using SwiftUI.

brief

A macOS application for quickly summarizing text.

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