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14-3-3_from_ania

2020_wilk_covid

Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"

acdc

Bug fixed version of acdc

addinslist

📜 Discover and install useful RStudio addins

aire_target

analyze_cytof_using_seurat

Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level. There are multiple tools to analyze CyTOF data but here I am presenting a tutorial of how one can quickly use Seurat (R package for scRNA-Seq analysis) for analyzing CyTOF data and understand the cellular and phenotypic diversity

ar-genes-gnomad

Variant carrier rate - Svetlana

autogenes

autogluon

AutoGluon: AutoML for Text, Image, and Tabular Data

baidupcs-go

Re-upload of iikira/BaiduPCS-Go

baidupcs-web

bamscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

bamtobw

Convert BAM files to bigWig files with a simple command

banovichlab

Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).

beta

BETA

biomethyl

An R package to interpret biological trends from DNA methylation data

bisque

An R toolkit for estimation of cell composition from bulk expression data

blog

Share my knowledge, share my life.

bp_prs

Evaluating the use of blood pressure polygenic risk scores across race/ethnic background groups

cadd-scripts

CADD scripts release for offline scoring. For more information about CADD, please visit our website

candimeth

CandiMeth: Powerful yet simple visualisation and quantification of DNA methylation at candidate features

cardiogenesis_repo

Cardiogenesis Repo

cell_blast

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

celldex

Collection of cell type reference datasets.

celligner_ms

Code related to the Celligner manuscript

cellranger

10x Genomics Single Cell Analysis

celltypecomp

Test different methods for cell type composition analysis

celltypist

A tool for semi-automatic cell type annotation

celseq2

Generate the UMI count matrix from CEL-Seq2 sequencing data

cheatsheets

Just a place to store cheatsheets