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jinyuansun Goto Github PK

followers: 79.0 following: 39.0 repos: 93.0 gists: 6.0

Name: jinyuan sun

Type: User

Company: Institute of Microbiology, CAS

Location: Beijing

Towards Computational Biology

I am currently trying to dive into exploiting deep learning to tackle complex biological problems and eventually give people better lives. This may be a long shot, but I will take the odds.

PymolFold⚗️
- Fold and design your protein in pymol.
- webapp
ChatMol
- ChatGPT in Pymol.
- Offcial Website
- Online chatbot
DDGScan🔥
- Score, analysis and visualization of protein mutation(s).
- GRPAE-WEB
CMPP🧬
- Fungal genome analysis.
- webapp

If you would like to discuss anything about applying deep learning to biological problems, feel free to get in touch with me: [email protected].
Publications.

jinyuan sun's Projects

ab_rmsd

Calculate the RMSD between two antibody structure (including nanobody and antibody).

alpaca-lora

Instruct-tune LLaMA on consumer hardware

alphafold

Open source code for AlphaFold.

alphafold-peptide-receptors

Identifying peptide-receptor interactions using AlphaFold-Multimer

autodocktools_py3

Python3 translation of AutoDockTools

automd-gmx

automated simple MD with gromacs

azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

biopython

Official git repository for Biopython (originally converted from CVS)

byprot

cage-prox

Computer aided proximal decaging as a universal strategy for temporal protein activation

camp

predicting peptide-protein interactions

cgm_3d_cnn

chatenzyme

Ask anything about enzymes

cmpp

Annotate C(CAZy)M(MEROPS)P(PHI)P(P450) for fungi.

computational-tools-for-protein-design

A maintained list of tools for computational protein design

conplex_dev

consistency_models

Official repo for consistency models.

ddgscan

DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein

ddgscan-doc

Docs for ddgscan

deepddg-pytorch

deepet_reps

An installable library to get DeepET representations.

deeplearning-biology

A list of deep learning implementations in biology

deepsniper

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

depect

Design and Engineering of Protein and Enzymes by Computational Tools

dlpacker-pytorch

a pytorch versioin of DLPacker

drug_pred

ecnet

An evolutionary context-integrated deep learning framework for protein engineering

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

enz-pred

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