jk619 Goto Github PK

app-roi2roitracking

This app will perform ensemble tracking between 2 or more cortical regions of interest (ROIs) from either a freesurfer parcellation or an atlas parcellation. The app will automatically generate ROI niftis in diffusion space for tracking based on inputted ROI numbers. Inputs include: parcellation (freesurfer; atlas optional), dt6 from dtiinit, and ROI pairings. Outputs include a track.tck for each pairing of ROIs, a classification structure, and a fg_classified structure which can then be fed into other apps on the website (example: Clean WMC Output).

bidsvistaprf

crowdingconservation

docker_fsl_bet

example docker how to run fsl

fmriprep_dsri

fmriprep_run

glmsingle

A toolbox for accurate single-trial estimates in fMRI time-series data

hcp_tractography

Pipeline for running tractography between any set of Rois

meridianbias

metamerobservermodel

mri_tools

Matlab and Python tools for MRI analyses

nei_code

nyu-annotate

A toolkit for annotating contours and boundaries on the cortical surface.

presurfer

Scripts to prepare MP2RAGE for Freesurfer

prfmodel

prfvista

A small respository to call pRF functions in vistasoft without the need to set up vistasoft sessions

prostriata

tractography 4 Prostriata

pyslicetime

kendrick's slicetime ported to python

sampledata

Code related to the processing of the Winawer lab sample dataset

test_retest_mrf

Code used for reproducibility study of Magnetic Resonance Fingerprinting (https://doi.org/10.1016/j.neuroimage.2020.117573)

vistadisp