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arast_sdk

assemblyutil

Set of KBase functions for interacting with Assemblies and ContigSets using the KBase data_api

cs_qc

Central store quality control.

data_api

Towards a unified data api for KBase

design_docs

High level documents regarding the design and architecture of KBase

genome_annotation_api

Data API for Genome Annotation Objects

genomeannotationfileutil

genomefileutil

kb_ea_utils

kb_kaiju

kb_prinseq

KBase SDK wrapping of PRINSEQ (specifically for the low complexity filtering)

kb_qualimap

kb_seed

The kb_seed module contains an import of a large body of code from the SEED project. These imports are performed on a periodic basis as new features developed on the SEED side are required in the KBase codebase. This deploys both client and service libraries.

kb_spades

SPAdes wrapper

kb_uploadmethods

kb_velvet

metrics

Scripts and other tools for collecting metrics and generating reports and summaries.

narrative

nextgen

Next generation of KBase documents and code experiments

ngsutils

KBase wrapper of NGSUtils

pangenomeorthomcl

project_guides

This repo contains documents and guides that describe project principles, how-to docs, etc.

readsapi

Service for fast retrieval of basic reads metadata for UI. For operating on reads in Apps, use ReadsUtils

readsutils

Functions for uploading and downloading KBase reads files.

sdk_testing

trying the sdk out

search

transform

A service that provides import, upload, and download capabilities as well as tools for validating and converting between data types, both internal and external to KBase.