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jlincbio's Projects

cred icon cred

Chem-seq Read Enrichment Discovery: CRED

kmers2 icon kmers2

kmeRs2: a updated version of kmeRs

marray_si icon marray_si

Supporting information for Horiuchi & Lin et al., Int. J. Oncol. 52(2): 441-452, 2018

musta2 icon musta2

MuSTA2: a updated version of Multi-Sample long-read Transcriptome Assembly

ncov icon ncov

Nextstrain build for novel coronavirus SARS-CoV-2

pblat icon pblat

parallelized blat with multi-threads support

pipoft icon pipoft

pipoft: R package for estimating effects of off-target binding by pyrrole-imidazole polyamides

rfpipeak icon rfpipeak

rfPIPeak: An R interface for Chem-seq peak calling using random forests.

rgsea icon rgsea

A new R implementation of Gene Set Enrichment Analysis (GSEA)

rseqr icon rseqr

An R-based pipeline to analyse RNA-seq data. This pipeline performs quality control of reads, generates gene and transcript level counts, performs differential analysis, and gene pathway enrichment analyses.

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