Augmented intellectual biology's Projects
sharing interactive single cell gene expression visualizations from Seurat
Estrus cycle study
A statistical model to analyze Tn-seq data
Automated cell type classification
Gene-List Network Enrichment Analysis
a tool for summarizing and integrating gene-set analysis results
Using Git and GitHub with R, Rstudio, and R Markdown
simple shortcut manager for macOS
Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
MSigDB gene sets for multiple organisms in a tidy data format
An R-based pipeline to analyse RNA-seq data. This pipeline performs quality control of reads, generates gene and transcript level counts, performs differential analysis, and gene pathway enrichment analyses.
Single-Cell Analysis in Python. Scales to >1M cells.
Collections of library structure and sequence of popular single cell genomic methods
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
An R package allowing flexible base trimming and complete Fastq analysis on Windows System
R toolkit for single cell genomics
Clone of the Bioconductor repository for the SingleR package.
Contents of the SingleR book.
A toolkit of spatial transcriptomic analysis.
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.