jliu678 Goto Github PK

cellcurator

sharing interactive single cell gene expression visualizations from Seurat

estrus_cycle_study

Estrus cycle study

fitness

A statistical model to analyze Tn-seq data

garnett

Automated cell type classification

gelinea

Gene-List Network Enrichment Analysis

genesetcluster

a tool for summarizing and integrating gene-set analysis results

happy-git-with-r

Using Git and GitHub with R, Rstudio, and R Markdown

hlca

icanhazshortcut

simple shortcut manager for macOS

intro-gam-webinar-2020

jliu678.github.io

markdown_readme

Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.

merfish_analysis

Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.

msigdbr

MSigDB gene sets for multiple organisms in a tidy data format

rseqr

An R-based pipeline to analyse RNA-seq data. This pipeline performs quality control of reads, generates gene and transcript level counts, performs differential analysis, and gene pathway enrichment analyses.

saw

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

scp

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

seqwins

An R package allowing flexible base trimming and complete Fastq analysis on Windows System

seurat

R toolkit for single cell genomics

singler

Clone of the Bioconductor repository for the SingleR package.

singlerbook-base

Contents of the SingleR book.

stereopy

A toolkit of spatial transcriptomic analysis.

tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.