Name: Jackson M. Tsuji
Type: User
Bio: I analyze genomic/metagenomic data to probe the ecology and evolution of phototrophy and the iron cycle. Currently a Young Research Fellow at JAMSTEC, Japan.
Twitter: JacksonTsuji
Blog: https://www.jamstec.go.jp/sugar/e/members/personal/Jackson_M_Tsuji.html
96-well-spec-analysis
Scripts for quickly processing 96 well plate data from the Neufeld lab spec
atlas
ATLAS - Three commands to start analysing your metagenome data
atlas-extensions
Extensions to the PNNL ATLAS pipeline
atlas-wrapper
A wrapper to run ATLAS within a Docker container
atlas2-helpers
Helper scripts for post-processing of ATLAS output, version 2 and higher
axiome-extensions
Misc personal scripts to extend or improve AXIOME
basic-sequence-analysis
Personal scripts for performing basic sequence file manipulations (FastA, FastQ)
bioconda-recipes
Conda recipes for the bioconda channel.
bioinformatics-m1
Notes about migration to an M1 Mac as a bioinformatics user
ca-chlorohelix-allophototropha-rci
Code repository associated with the manuscript, "'Candidatus Chlorohelix allophototropha,' the first anoxygenic phototrophic Chloroflexota member to use a Type I photosynthetic reaction center"
chlorobia-cyc2-genomics
Companion repository to the manuscript, "Anoxygenic photosynthesis and iron–sulfur metabolic potential of Chlorobia populations from seasonally anoxic Boreal Shield lakes"
gc-spec-analysis
A collection of scripts for working with GC/spectrophotometer data. Includes converting from standard curves, and so on.
jmtsuji.github.io
Back end of research intro website
metannotate-analysis
Code to process and visualize output from MetAnnotate (DoxeyLab tool)
nanoclust
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
pandaseq-mgtools
Collection of scripts to optimize and use PANDAseq for paired-end alignment of metagenomic reads
qiime2-helpers
Helper scripts to streamline QIIME2 analyses
tellread_format_conversion
Simple scripts for handling the output of the TELL-Read pipeline
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
