johnmous Goto Github PK
Name: Giannis Moustakas
Type: User
Company: Leiden University Medical Center
Bio: Bioinformatitian working on a wide range of projects, mostly analyzing Next Generation Sequencing datasets.
Location: Netherlands
Giannis Moustakas's Projects
chip_seq_snakemake
chipseq
wdl ChIPseq pipeline
cnv_analysis
development
get_read_ids
Requires an alignment file and a list of cell barcodes. Returns a list of read IDs that have a barcode from the list in tag
gfanalysis
kaggle_titanic
m3drop
mad
Scripts used @MAD, UVA
methylation
methylationscripts
mirna_scripts
miRNA R Scripts used @MAD
portfolio
progfun-wiki
rag_llm
A first implementation of a Retrieval-Augmented Generation
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
rnaseq_analysis
selectpeaks
seurat
R toolkit for single cell genomics
sfaira
data and model repository for single-cell data
single_cell-embryo_gonads
single_cell-hpgclcs
Scripts and resources for manuscript
singlecell
smallscripts
Small scripts that cannot be categorized somewhere else
snp_analysis
trackreads
Track reads among alignment files. Intended for use for the RNASeq protocols comparisson
try_git
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