johnstantongeddes Goto Github PK

acorns-analysis

Example analysis of acorn data from Koenig and Knops (2013)

aphaenofest2013-reproducible-research

Presentation on reproducible research for transcriptome assembly

aptranscriptome

Transcriptome assembly and gene expression analysis for *Aphaenogaster* ant species

bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

biostar-central

Biostar Q&A

campaignplanner

Example code for Lesson on Response Campaign planning

ccthermbe

Analysis of thermal effects of forager caste development

choosealicense.com

A site to provide non-judgmental guidance on choosing a license for your open source project

climate-cascade

Repository for NSF Dimensions of Biodiversity Award #1136717

data-science-resources

A list of resources I've found to be valuable

dmkt-twitter-auto-sentiment

Sentiment analysis of tweets about automotive brands

dplyr

Plyr specialised for data frames: faster & with remote datastores

eco-centennial-paper

Manuscript for Centennial paper in Ecology

ecobiblatex

Biblatex styles for ecology journals

gapit

google-location-coronavirus

Data from Google's Covid-19 Mobility Report

gotelli-lab-demo

git demo

hands-on-reinforcement-learning-with-python

Master Reinforcement and Deep Reinforcement Learning using OpenAI Gym and TensorFlow

headyfinder

Find the closest place selling Heady Topper!

highcharter

http://jkunst.com/highcharter/ Another R wrapper for highcharts based on htmlwidgets

hippybot

Hipchat.com bot written in Python with a simple plugin API

johnstantongeddes.org

Website and lab notebook

jsgtest

linuxgems

A succinct cheat sheet for newbie linux coders and system administrators, documenting some of the more obscure and useful gems of linux lore. Intended to be viewed in emacs org-mode, or VimOrganizer, though any text editor will suffice.

mt-gapit

GAPIT pipeline for Medicago HapMap project

mt-gcta

Scripts used for [GCTA](http://www.complextraitgenomics.com/software/gcta/) analysis of Medicago data

mtgiraffe

Script for identification of haplotype clusters in Medicago genes.

presentations

Presentations

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

raceperformancepredictor

Running race performance predictor