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arduino_robotcar_embodieddeeplearning

ashs-slurmparallel

Original code from https://www.nitrc.org/projects/ashs/. The goal of this project is to add Slurm parallelization compatibility

bidstosingletrialglm

bigbrain_hippocampus

scripts for analysis of BigBrain 2015 hippocampal blocks (L/R; 40um isotropic)

bigbrainwarp

BigBrainWarp

brainspace

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

caffe-segnet-cudnn5

This repository was a fork of BVLC/caffe and includes the upsample, bn, dense_image_data and softmax_with_loss (with class weighting) layers of caffe-segnet (https://github.com/alexgkendall/caffe-segnet) to run SegNet with cuDNN version 5.

deeplearning

every grad student needs to spend the requisite hours floundering with these types of tools and ideas

deeplearning_gpu_singularity

medial imaging deep learning singularity container

hippo_spin_testing

Spin testing implemented in the hippocampus using HippUnfold

hippocampal_autotop

hippograd

hippomaps

hipponet

hipponify

Neuronify model of hippocampal circuitry

hippseg

Segmentintg code for BHW17

hippunfold

BIDS App for Hippocampal AutoTop (automated hippocampal unfolding and subfield segmentation)

hippunfold_toolbox

hippunfolding

Code for unfolding of hippocampal grey matter using Laplacian equation. Requires manual labelling of the hippocampal 'dark band' and grey matter, as well as some surrounding structures (see associated publication for instructions)

jordandekraker.github.io

micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

niftynet-imageaugmentation

Code, slides, and examples of how to augment image-based deep learning problems using the method described by Uzonova et al. (2017)

nighres

Processing tools for high-resolution neuroimaging

oldcortex

postproc-smk

Simple Post-BIDS processing pipeline with snakemake

slicer_laplacesolver

Code for Slicer Module (via MATLAB bridge) to solve Laplace equation within a label volume

smallhipp

rsfMRI with high res

superficial-white-matter

Generates surfaces at various white matter depths

temporalpolarmap

tractography

Data driven tractography clustering