jordandouglas Goto Github PK

bacter

Bacterial phylogenetics in BEAST 2.

bayesiantranscriptionelongation

Repository of .tex files for papers

bdmm2.7

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

clockmodelpaper

coalre

Beast2 implementation of the coalescent with reassortment

guidedtreeoperators

BEAST2 implementation of guided phylogenetic tree operators

hetmm

Heterogeneous Michaelis-Menten model

indeldollo

Sequence insertion module Bayesian analysis

jordandouglas.github.io

lowess

Identifying the conditions that make a Bayesian phylogenetic analysis slow to converge during MCMC

mascot2.7

BEAST2 implementation of the Masco approximation of the structured coalescent with forwards/backwards algorithm for node state calculation

multitypetree2.7

BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.

narrowexchangerates

A repository for the BEAST2 narrow exchange rate operator and its accompanying manuscript

orc

Optimised relaxed clock (ORC)

paramyxovirusslippageevolution

SI: Evolutionary history of transcriptional slippage in the Paramyxovirus phosphoprotein gene

poetry

A BEAST2 package for simulating and running randomly generated XML files

recombination2.7

BEAST2 package to model recombination

speciesnetwork

Bayesian Inference of Species Networks from Multilocus Sequence Data (a package for BEAST2)

speedemon_si