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Jordan Lab's Projects

chocogen3-chandeetal-2020 icon chocogen3-chandeetal-2020

Scripts for Chande et al. 2020. The phenotypic and functional consequences of genomic divergence between admixed Latin American populations: Antioquia and Chocó, Colombia

gadget_compute icon gadget_compute

Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/

gadget_explore icon gadget_explore

Source code for the GADGET explore module: https://gadget.biosci.gatech.edu/explore/

nifh_extract icon nifh_extract

nifH_extract is a pipeline that retrieves a preliminary database of sequences from using an existing database of nifH genes.

pchunk icon pchunk

Rapid, accurate annotations of Plasmids from Illumina NGS reads

sting icon sting

Ultrafast sequence typing and gene detection from NGS raw reads

stringmlst icon stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST)

tagore icon tagore

The script presents a simple way to visualize features on human chromosome ideograms

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