Comments (6)
Do you mind compressing and attaching your input file? I don't have any augustus ones currently to test with.
from biocode.
This is the input file
Test_augustus.gff.gz
from biocode.
Thank you. And did you install biocode via pip or git checkout?
from biocode.
No, I just directly run this script. Should I install biocode first?
from biocode.
It's fine to operate from a checkout rather than installing, you just have to modify PYTHONPATH so it knows where to find the modules. From the README:
cd /opt
git clone https://github.com/jorvis/biocode.git
You probably want to add this line to your $HOME/.bashrc file
export PYTHONPATH=/opt/biocode/lib:$PYTHONPATH
from biocode.
When I did this the conversion ran fine. Attaching result.
test.gff3.gz
from biocode.
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