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alphafold

Open source code for AlphaFold.

assembly

Code to deal with biological assemblies

biojava

BioJava is an open-source project dedicated to providing a Java framework for processing biological data.

biojava-tutorial

A tutorial for BioJava 3

biozernike

Protein structure descriptors and alignment based on 3D Zernike moments.

biozernike-logistic-regression

Biozernike domain classification test

click-logger

Minimal GUI program to log the coordinates of clicks on an image

cmview

CMView: protein contact map visualization and analysis

eppic

Evolutionary protein-protein interface classifier

forester

forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

gps-data-conversion

Code to convert csv GPS data to xml

graphql-java

GraphQL Java implementation

graphql-spqr

Java 8+ API for rapid development of GraphQL services

jgrapht

Master repository for the JGraphT project

mmseqs-web

mmseqs-web-backend

mmtf

A description of the mmtf file format

mmtf-java

The Java implementation of the MMTF format. Includes the APIs for the data, decoding and encoding libraries. Also includes a reference implementation of the data format.

mmtf-python

The python implementation of the MMTF API, decoder and encoder.

molstar

A comprehensive macromolecular library

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

protein-structure-embedding

qs-align

:arrow_lower_right::arrow_upper_right::leftwards_arrow_with_hook: Scalable protein quaternary structure alignment algorithm

rcsb-saguaro-app

RCSB Saguaro 1D Feature Viewer Web App

schemagen-graphql

GraphQL-Java add-on that adds support for Schema Generation & Execution for enterprise level applications.

symmetry

Detect, analyze, and visualize protein symmetry