Name: Jarrett Phillips
Type: User
Bio: Bioinformatician, data scientist and Postdoc in Integrative Biology. Developing computational, mathematical and statistical methods for DNA barcoding
Twitter: JarrettDPhilli1
Location: University of Guelph
Blog: https://jphill01.github.io/
Jarrett Phillips's Projects
A simplified R implementation of Catch the Ace
Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.
Implementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.
Molecular Acquisition, Cleaning, and Evaluation in R (MACER) is an R package to assist biological researchers in assembling taxonomically and marker focused molecular sequence data set. MACER accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The MACER package has four core functions.
Example walk through for the MACER pacakge located at rgyoung6/MACER.