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bioconda-recipes

Conda recipes for the bioconda channel.

collapse_duplicates

Script for collapsing duplicate rows by adding numerical values together. Originally used for flashLFQ quantitative output with peptides.

compute_expression

Short script for generating string inputs for "compute" Galaxy tool

cravat-galaxy-visualizer

A Galaxy visualization plugin that emulates the look and functionality of CRAVAT's interactive viewer.

cravat-galaxy-visualizer-version-0.0

cravatp-galaxy-docker

A docker image flavor extended from the Galaxy docker image to include the CRAVAT-P tool and visualization plugin. https://jraysajulga.github.io/cravatp-galaxy-docker.

cravatp_score_and_annotate

An extended version of In Silico's Galaxy tool for submitting genomic inputs for annotation to the CRAVAT servers.

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

functional-tools-analysis

Comparative survey of metaproteomics tools (i.e., eggNOG-mapper, MetaGOmics, MEGAN, MetaProteomeAnalyzer, Prophane, Unipept).

fx

Command-line JSON processing tool 🔥

galaxy

Data intensive science for everyone.

galaxyp-tool-yaml-generator

Generates a YAML file from the JSON dictionary from GalaxyP's API.

galaxytools

:microscope::books: Galaxy Tool wrappers

galaxytools-1

google-photos-deletion-verifier

A Google spreadsheet script that aids in double checking whether or not I completely uploaded a set of MP4 files correctly.

graph2pro-var

group_humann2_uniref_abundances_to_go

group_humann2_uniref_abundances_to_go-py

group_humann2_uniref_abundances_to_go-wrapper

high-performance-liquid-chromatography-research-programs

Language: Java | Background/Instructions: multidlc.org/columnsim

imetaquantome

A Galaxy visualization plugin developed for plotting data derived from the metaquantome tool. Interactive charts include bar charts, PCA plots, heat maps, etc...

interactiveviewer

Galaxy visualization plugin that is used by specially prepared Galaxy tools (e.g., QuanTP) to replace static visualizations with interactive Plotly graphs.

megahit-contig2fastg-wrapper

megahit_out

Testing repository for MEGAHIT

metaquantome

metaquantome-usage

metaquantome_mcp_analysis

Analysis scripts for the metaQuantome MCP paper

organize-stickies

Organizes MacOS Stickies window positions according to text content

pepquery

PepQuery: a peptide-centric search engine for novel peptide searching

pepquery-recipe

Conda recipe for PepQuery