jrjhealey Goto Github PK

followers: 47.0 following: 58.0 repos: 35.0 gists: 24.0

Name: Joe Healey

Type: User

Bio: Not really a bioinformatician, I just play one on the internet.

Joe Healey's Projects

adventofcode2018

Solutions to the Advent of Code challenge 2018 (probably not perfect).

This is the new home for the screen and audio capture utility for controlling amBX lights. This software is not in active development, and is here mainly to provide a new download location and a way for people to access the source code.

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

badassbash

An all-singing, all-dancing, bash template for cool CLI scripts (a bash cookiecutter).

bash_functions

Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz

biograpy

Biological Graphic tool in Python

bioinfo-tools

Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

biopython

Official git repository for Biopython (converted from CVS)

biostar-central

Biostar Q&A

chimera

Scripts for UCSF Chimera and PyChimera, for data analysis and graphics generation

deseq2-tutorial

A transliteration of the DESeq2 Tutorial by Dave Wheeler which no long seems to be live, so I'm preserving it in case it disappears from the WaybackMachine

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

dnaplotlib

DNA plotting library for Python

isis

Nothing to do with the Islamic State; a repository to hold data and workflows for In Silico Immunogenicity Studies

italicise_apalike_bst

A modified `apalike.bst` LaTeX bibliography style file to include italicised 'et al.'s'

journalbot

Source code for Journal club bot at https://twitter.com/JC_pathogenomic

jrjhealey.github.io

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

multigeneblastparser

Script(s) to handle the output of MultiGeneBlast (http://multigeneblast.sourceforge.net/)

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

oread

A commandline and GUI tool for the creation of Artemis/Artemis Comparison Tool files.

pdb2cdextrapolator

A (relatively) simple extrapolation script for PDB2CD web server data, to allow it to be compatible with Dichroweb and other Circular Dichroism tools.