Comments (2)
Thanks for the quick reply! I adapted the MAX_SIZE, recompiled, optimized some other parameters and now I got them to stitch.
Thank you very much for your help!
Stijn
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Thanks for the question, and for including the reads.zip file. It appears that your reads are longer than the MAX_SIZE
allowed by NGmerge, which is 1024. You should increase that value in this line of NGmerge.h
, recompile the program, and then use it.
from ngmerge.
Related Issues (20)
- qual_profile HOT 1
- doesn't easily install on Mac OS HOT 2
- NGmerge failing if read IDs are indicated by a forward slash HOT 2
- no adapter removal with dovetailed alignments HOT 2
- Reads are good but throws error: "Sequence/quality scores do not match" HOT 4
- is there any option for batch processing? HOT 1
- bioconda install HOT 2
- Merging problem HOT 3
- feature request: use false positive rate instead of error rate? HOT 2
- Documentation Requested for Custom Quality Profile
- (bio)conda recipe needs to be updated
- Error! not matched in input files HOT 2
- support for Bash process substitution HOT 3
- Error! Quality scores outside of set range HOT 1
- Error! sample: unknown command-line argument HOT 2
- Error! -2 cannot open file for reading HOT 1
- feature request: ubam input/output? HOT 1
- Undertanding how merged read when bases unmatched HOT 4
- increase highest possible Q value to comply with Aviti high quality data HOT 2
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