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bioconductor-galaxy-cancer-genomics-toolbox

cgcloud

Image and VM management for Jenkins, Spark and Mesos clusters in EC2

cgpbigwig

BigWig manpulation tools using libBigWig and htslib

cgpcavemanwrapper

Reference implementation of CGP workflow for CaVEMan SNV analysis

cgppindel

Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel

cgpvcf

Vcf file utilities

compose

🎺 Open source music compositions.

config

django-rest-framework-bulk

Django REST Framework bulk CRUD view mixins

django-rest-framework-filters

Better filtering for Django REST Framework

dockstore-cgpwgs

Dockstore implementation of CGP core WGS analysis

dockstore-cgpwxs

Dockstore implementation of CGP core WXS analysis

docsify

🃏 A magical documentation site generator.

ecan_app

My first django app developed during a GRA at NYU in 2015. Tracks garbage imagery and tries to classify new objects using Random Forests.

ecan_rpi

One of my first python projects. Raspberry Pi code to control a stepper motor, take 360 degrees images of garbage and upload them to a Django application.

github-issue-templates

:symbols: A collection of GitHub issue and pull request templates

muskcloud

pcap-core

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)

pypandoc

Thin wrapper for "pandoc" (MIT)

pytest-cookies

🍪 The pytest plugin for your Cookiecutters

pytest-env

pytest plugin used to set environment variables

python-base

pyvcf

A Variant Call Format reader for Python.

redoc

📘 OpenAPI/Swagger-generated API Reference Documentation

relojito

sphinx

Main repository for the Sphinx documentation builder

star

RNA-seq aligner

sublime_settings

My set of .sublime-settings configuration files. To use Sublime Text with my settings, replace the User directory with this repo.

theta

Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.

tiagle

🌳Jupyter notebook with a Google Interview preparation.