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ataqv

A toolkit for QC and visualization of ATAC-seq results.

bisc

book

containers

Various Docker container

data-science-sequencing.github.io

Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-git-tools

A collection of tools which Ensembl uses to work with Git

ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

ensembl-rest

Language agnostic RESTful data access to Ensembl data over HTTP

ensembl-test

Test libraries and harnesses used for running the Ensembl test suite

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

epirr

A registry of epigenomics reference data sets

homebrew-cask

Meta formulas for homebrew/linuxbrew

homebrew-ensembl

Core formula for Ensembl

ihec-ecosystems

This repo is for code and documentation associated with the ihec-ecosystems working group

ihec-metadata

This is the repo for the IHEC metadata standards

public-plugins

Plugins for an Ensembl website

test

wiggletools

Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency