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.github

Special repository containing the profile directory of JuliaEpi.

agent-based-epidemic-sim

agentbasedepidemicsdynamics

algebraicpetri.jl

Build Petri net models compositionally

bayesfitr_halle

Teaching material for Halle Summer School 2022: Bayesian inference of infectious disease ODE models in R

canmod-2022

Materials for 2022 CANMOD Workshop on Compositional Methods for Health Modeling

catalyst.jl

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

colprac

Contributor's Guide on Collaborative Practices for Community Packages

concrt.jl

coronanetr

R package that offers access to the CoronaNet policy database of government responses to COVID-19.

covid-19-in-households-public

covid-19-lancetid

A clone of Peter Jentsch's covid19 model

covid-19-ml-quarantine-control-model

covid-19_piedmont

COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.

covid-sim

This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London.

covid19-1

Wang et al SEIR-like model for 2019/20 Covid-19 outbreak

covid19-italy-integrated-surveillance-data

COVID-19 integrated surveillance data provided by the Italian Institute of Health and deconvolved via UnrollingAverages.jl.

covid19_spatial_model

This repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-dependent spatially-stratified predictive model, accounting for multiple viral variants and vaccines".

covid19_uni_network_model

covid19_worker_network_model

covid19abm.jl

Agent Based Model for COVID 19 transmission dynamics

covid19survey

source code for "Monitoring Public Behaviour During a Pandemic Using Surveys: Proof-of-Concept Via Epidemic Modelling"

covid_vac

ABM simulating vaccination strategies against COVID-19

covidcountydash.jl

covidpoliticalevents.jl

Paper replication package.

covidscenariopipeline

Public shared code for doing scenario forecasting and creating reports for various governmental entities.

covidseir

Bayesian SEIR model to estimate the effects of social-distancing on COVID-19

covidsurvey

WIP package that explores the relationship between survey data and epidemiological observations on Covid19

delayed_dose

discussions

Repository hosting organisation-level discussions for JuliaEpi to broadcast news, create conversation in the community, answer questions, and share ideas.