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allenccf

Tools to work with Allen Inst CCF data in matlab

aplysiaattractoranalysis

eLife paper code

apt

Animal Part Tracker

arduino

biologicallyplausiblelearningrnn

bmi

This is a library that we developed for the departmental Brain Machine Interfacing competition of Imperial College, using home-made machine-learning algorithms.

brainrender

a python based software for visualization of neuroanatomical and morphological data.

capstone2_covid19

case-studies-python

An introduction to the practicing neuroscientist to data analysis in Python

communication-subspace

Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2018)

course-content

Summer course content for Neuromatch Academy

das_rrr

Interactive Tutorial to Reduced Rank Regression

datascienceguidedcapstone

dca

Distance Covariance Analysis

deeplabcut

Markerless tracking of user-defined features with deep learning

ds-career-resources

Compilation of resources and insights that helped me on my journey to data scientist

ds-take-home

My solution to the book A Collection of Data Science Take-Home Challenges

glmspiketraintutorial

Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data

gramm

Gramm is a powerful visualization toolbox which allows to quickly create complex, publication-quality figures in Matlab, and is inspired by R's ggplot2 library. As a reference to this inspiration, gramm stands for GRAMmar of graphics for Matlab.

hfopt-matlab

A parallel, cpu-based matlab implemention of the Hessian Free (HF) optimization (feed forward networks, recurrent neural networks (RNN), multiplicative recurrente neural networks (MRNN)).

janeliamlcourse

Janelia machine learning course resources

janeliamlcourse-1

jfcrig

DAQ code for JFC rig

jrclust

Jun Rocket Clust

jrclustjup36

lfads-run-manager

Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)

matlab

matlab-code

matlabneuraldatapipeline

This repo contains the pipeline for Matlab neural data analysis

modelingneuralcircuits

PDF and Code to accompany the textbook "Modeling Neural Circuits Made Simple"