installation error with R 3.6.0

[justinaz]

installation error with R 3.6.0

[JustinaZ]

Hello,
Just installed R 3.6; package does work if you follow description given in README.txt.
If you recently installed latest R version, I think you need to re-install other packages too:

1. pcaMethods which is available from Bioconductor,
   https://www.bioconductor.org/packages/release/bioc/html/pcaMethods.html

if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pcaMethods")

2. mnormt

3. mclust

Hope this helps.
Regards,
J.

[joemsong]

Thank you! I used install.packages instead of devtools::install_github(). Now it worked out. Best regards, Joe

…

On Mon, May 6, 2019 at 6:47 PM JZ ***@***.***> wrote: Closed #3 <#3>. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#3 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AG3D6DUQUDEFBDJ6YPUS2D3PUBOI3ANCNFSM4HLAZGSA> .

[royfrancis]

I get the following error on installation. I think i have the dependencies already.

devtools::install_github("JustinaZ/pcaReduce")

...
** help
Error : (converted from warning) /tmp/Rtmp9rEOJ7/R.INSTALL17054b74db85/pcaReduce/man/pcaReduce-package.Rd:25: All text must be in a section
ERROR: installing Rd objects failed for package ‘pcaReduce’
* removing ‘/home/roy/R/x86_64-pc-linux-gnu-library/3.6.0/pcaReduce’
Error: Failed to install 'pcaReduce' from GitHub:
  (converted from warning) installation of package ‘/tmp/RtmpsZaRNe/file1a650210022/pcaReduce_1.0.tar.gz’ had non-zero exit status
>> packageVersion("devtools")
[1] ‘2.2.2’
>> packageVersion("pcaMethods")
[1] ‘1.76.0’
>> packageVersion("mnormt")
[1] ‘1.5.6’
>> packageVersion("mclust")
[1] ‘5.4.5’
>> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.4 LTS

[royfrancis]

I downloaded pcaReduce_1.0.tar.gz which worked.