Name: Justin Shaffer
Type: User
Company: California State University, Fresno
Bio: Microbial ecologist interested in understanding functional ecology underlying host-microbe interactions in plants and humans.
Location: Fresno, CA, USA
2024-07-09-software-carpentry
Official website for the Carpentries workshop at Fresno State July 9-10, 2024
absolute_abundances_metagenomic_syndna
Codebase for synDNA from Zaramela et al. 2022
cmi-workshops
context-dependent-and-variable-effects-of-endohyphal-bacteria-on-interactions-between-fungi-and-seed
Data and code for analyses performed in this study
deicode
Robust Aitchison RPCA on sparse omics datasets
ebi_sra_downloader
A tool that allows users to efficiently fetch studies from the European Nucleotide Archive (ENA) and the Sequence Read Archive (SRA).
emp
Code repository of the Earth Microbiome Project.
endohyphal_bacterium_alters_substrate_use_by_fusarium_keratoplasticum
Biolog plate data and R code for analysis
extraction_kit_benchmarking
Repository for code used for data processing and analysis of microbial sequence data generated from various DNA extraction kits designed for high-throughput extraction of microbiome samples.
extraction_test_magmax
gapminder_project
Repository for iPlant software carpentry git exercises
metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
qiita
Qiita - A multi-omics databasing effort
r-ecology-lesson
:notebook: Data Carpentry R lessons on ecology.
sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
shell-novice
Software Carpentry introduction to the shell for novices.
validation-notebooks
A collection of validation notebooks for benchmarking molecular and computational methods for performing a microbiome study
zebra_filter
Filtering out false taxonomic hits from shotgun sequencing based on genome coverage
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
