jvollme Goto Github PK
Name: JohnVollmers
Type: User
Company: Karlsruhe Institute of Technology
Location: Karlsruhe, Germany
JohnVollmers's Projects
bac-genomics-scripts
Collection of scripts for bacterial genomics
bin_polisher
Purify pre-generated bins (e.g. using Maxbin) based on z-score differences in contig coverage using multiple sequencing datasets
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
fasta2phylip
simple conversion of fasta alignments to phylip
fastq2fasta
simple fastq to fasta conversion
groopm
Metagenomic binning suite
krona
Interactively explore metagenomes and more from a web browser.
mdmcleaner
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
po2pocp
Calculates pairwise pocp values from proteinortho5 results.
po_2_genecontent
Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho
po_2_mlsa
Enables the calculation of phylogenies based on single copy core genome gene products, based on bidirectional BLAST results obtained with proteinortho
prokka
Rapid prokaryotic genome annotation
wget-feedstock
A conda-smithy repository for wget.
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