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Name: Joshua Welch
Type: User
Bio: Computational biologist, Associate Professor at University of Michigan, and PI of @welch-lab. We develop novel computational methods for single cell genomics.
Twitter: LabWelch
Name: Joshua Welch
Type: User
Bio: Computational biologist, Associate Professor at University of Michigan, and PI of @welch-lab. We develop novel computational methods for single cell genomics.
Twitter: LabWelch
AppEnD tool for mapping 3’ additions from RNA-seq data. See details in Welch et al., RNA 2015: http://rnajournal.cshlp.org/content/21/7/1375.abstract
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Fall 2020 BIOINF List of Approved Papers
BIRSBIO2020 workshop, scNMTseq data, LIGER analysis
code and data for the paper `Kernel Manifold Alignment for domain adaptation'
MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epigenomic data. See Welch et al. (2017) for more details: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1269-0
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
Validating Joint Analysis of Single-Cell Transcriptome and Epigenome Data Using scNMT-seq and SNARE-seq
A streaming algorithm for community detection algorithm in very large networks
Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: http://nar.oxfordjournals.org/content/early/2016/01/05/nar.gkv1525.full
SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0975-3
A module for working with snap files in Python
Welch Lab
Manubot for white paper
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.