jwildenhain Goto Github PK

3dunetcnn

Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

acapellastomatameasurer

PerkinElmer Acapella Script for Stomata Detection from FLEX files

awesome-deep-learning-papers

The most cited deep learning papers

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-public-datasets

An awesome list of high-quality open datasets in public domains (on-going).

awesome-random-forest

Random Forest - a curated list of resources regarding random forest

base16

Color schemes for hackers

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

biop-operetta-tools

Scripts and tools to use for the PerkinElmer Operetta System

boxplotr.shiny

shiny application to generate box plots with R

cellprofile-r

An interface in R to CellProfiler and CellProfiler Analyst databases: CellProfiler (CP) and CellProfiler Analyst(CPA) are tools for analysing image sets of cells. The software is designed to enable biologists to easily quantify phenotypes from thousands of images automatically. CellProfileR, an R package for the statistical programming environment R, enables the users of CP/CPA to easily interface their databases (mysql, sqlite, csv) with R through generic methods. This is particularly useful where more sophisticated downstream analyses are required. Convenience functions and a number of workflows are provided. Additional feature suggestions are welcome.

checkerboardr.shiny

Synergy/Antagonism visualisation and calculation using Bliss Independence and Highest Single Agent (HSA)

chembl.rdf

Scripts to create RDF for ChEMBL.

chembl_beaker

RDKit and OSRA in the Bottle on Tornado

chembrain

Learn chemistry through tactile play. Build intuition for molecules and chemistry by drawing and playing interactive d3.js visualizations in your browser.

chemical-genetic-matrix

Source code submission relating to Chemical Genetic Matrix in Scientific Data

chemical-genetic-synergy

code used in article: 'Prediction of Synergism from Chemical-Genetic Interactions by Machine Learning' in Cell Systems 2015

clir

R package manager for Command Line Interface

clustvis

ClustVis web tool

conv_arithmetic

A technical report on convolution arithmetic in the context of deep learning

cudamat

Python module for performing basic dense linear algebra computations on the GPU using CUDA.

cytodata-hackathon-2018

Ideas, code and results of the 2018 CytoData hackathon

database-migration

deep-learning-keras-tensorflow

Introduction to Deep Neural Networks with Keras and Tensorflow

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deepdrug3d

deeplearning-mindmap

A mindmap summarising Deep Learning concepts.

deeploc

This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content microscopy data with deep learning"

deepnetsforeo

Deep networks for Earth Observation

deepo

Set up deep learning environment in a single command line.