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asct

Automatic Single-cell Toolbox

awesome

Collection of useful resources on Bioinformatics, data science, machine learning programming language (Python, Golang, R, Perl) and miscellaneous stuff.

bed

Bayesian Epiallele Detection (BED)

biotools

A list of useful bioinformatics resources

bwa-meth

fast and accurate alignment of BS-Seq reads

cheatsheets

RStudio Cheat Sheets

cpp

data-science-blogs

A curated list of data science blogs

edmr

Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.

edx

Course materials for the edX Data Analysis for Genomics

fastq_clean

Fastq_clean is optimised to batchly clean the NGS data from the IlluminaTM sequencer

fastqvalidator

Validate FastQ Files

findpeaks.jl

Contains `findpeaks` function for Julia (v1.0)

genome-scripts

Genome Scripts used in fungal comparative genomics

hmmcopy_utils

Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.

icages

iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient

kerneldensitysj.jl

Bandwidth selection using Sheather and Jones algorithm (sometimes known as width.SJ or bw.SJ)

knitr-examples

a collection of knitr examples

labs

Scripts for HarvardX courses: PH525x

leiden.jl

A Julia implementation of the Leiden algorithm for community detection.

libstatgen

Useful set of classes for creating statistical genetic programs.

lncscore

Prediction of lncRNA from RNA-Seq data

markdown-toclify

A Python command line tool that creates a Table of Contents for Markdown documents

matplotlib-gallery

Examples of matplotlib codes and plots

ngs

pattern_classification

A collection of tutorials and examples for solving and understanding machine learning and pattern classification tasks

phenolyzer

phenotype-based prioritization of candidate genes for human diseases

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

quickpalette

🏃‍♀️🎨 R package for quick extraction of color palettes from text and images

r-ninja

R语言忍者秘笈