kamdh Goto Github PK

allen-pull-new-data

allen-voxel-network

Data processing pipeline for Allen Institute for Brain Science voxel connectivity data

amath50

chunk-pbs

Break a list of commands into chunks to be executed as separate PBS (Portable Batch System) jobs

coordinatetransform

edfgui

friday-harbor

Starter code for the 2014 Dynamic Brain Workshop in Friday Harbor

high-res-connectivity-nips-2016

Code and data repository to accompany "High resolution neural connectivity from incomplete tracing data using nonnegative spline regression"

kamdh.github.io

My website

l-bfgs-b-c

L-BFGS-B, converted from Fortran to C, with Matlab wrapper

max-qnorm-tensor-completion

Tensor completion via max-quasinorm minimization

mouse_connectivity_models

Python package providing mesoscale connectivity models for mouse.

networkx

Official NetworkX source code repository.

prebotc-graph-model

Bursting neuron model of the pre-Botzinger complex, implementing multiple neuron types and arbitrary network structure

random-frame-graphs

sparse-random-features

Sparse random features inspired by sparse networks in the brain (e.g. cerebellum, mushroom body, electrosensory lateral line)

spatial-network-regression

Voxel connectome inference via nonnegative spline regression

ssm

Bayesian learning and inference for state space models

tvart

Time-varying Autoregression with Low Rank Tensors

unlocbox

A Matlab convex optimization toolbox using proximal splitting methods