kanduric Goto Github PK

2016-07-01-examplesitescw

airpollutionmonitoring

R functions to interact with the air pollution monitoring data

datasciencecoursera

Created as part of a course work (Data Scientist's toolbox; Coursera)

datasharing

The Leek group guide to data sharing

demo_reproducibility_kanduricetal2021

Demonstration of reproducibility and deployability of the computational workflow of the article "Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification" (https://doi.org/10.1101/2021.05.23.445346)

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

genomebuildpredictor

Predicts the genome build version of genomic track files, if any of the sequence coordinates in the input track file are unique to a genome build version

genomicoverlap

To compute the cumulative overlap of the regions between two files containing genomic intervals

genrank

Candidate gene prioritization based on convergent evidence

genrank_updated

updated GenRank just for build checking

github_actions_tutorial

kanduric.github.io

Personal Homepage

kanduric_examplecode

ligo_usecase_3

pml_aug_2015

Repository for Practical Machine Learning course on Coursera

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

simairr

A tool for simulation of antigen-experienced adaptive immune receptor repertoire (AIRR) datasets for benchmarking of machine learning (ML) methods.

transcriptomicsbatcheffectsim

scripts to simulate batch and biological effects in transcriptomics data to explore the problem terrain of handling batch effects

usecases_simairr