Comments (3)
Also:
install.packages("devtools")
source("http://bioconductor.org/biocLite.R")
biocLite("Biostrings")
biocLite("DESeq2")
biocLite("munsell")
biocLite("stringi")
biocLite("chron")
biocLite("permute")
biocLite("assertthat")
biocLite("tibble")
biocLite("rmarkdown")
biocLite("readxl"
from ampvis2.
You are welcome to update it and submit a pull-request :)
from ampvis2.
Close it. In the future it will simply be:
source("http://bioconductor.org/biocLite.R")
biocLite("MadsAlbertsen/ampvis2")
from ampvis2.
Related Issues (20)
- object error going into amp_ordinate HOT 4
- amp_boxplot is broken
- About to know_Can I change the color in the ordination plots HOT 1
- amp_ordinate: sample_trajectory by date is returning error
- the sample_color_order variable of the amp_ordinate function HOT 1
- amp_ordinate NMDS # of axes HOT 2
- R fatal error when drawing heatmaps with more than 2 variables HOT 7
- amp_filter_samples returns NA's in tax if taxonomy has fewer entries than abund HOT 2
- Similar values for Shannon diversity for rarefied and unrarefied reads HOT 2
- Generating loading/biplot HOT 1
- amp_boxplot order genera by corresponding phyla HOT 1
- boxplot doesn't order taxa correctly HOT 2
- How to reorder the Y axis from the default ampvis2 heatmap HOT 1
- Problems plotting functions in amp_heatmap when aggregating on species-level
- amp_boxplot errors when group_by has length > 1
- Specify ASV/OTU column by name or index? HOT 3
- How to `group_by` in `use amp_frequency` HOT 2
- Heatmap normalise_by only works by sample names HOT 4
- metadata factor levels are dropped, boxplot+heatmap
- Add plot alpha diversity HOT 5
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from ampvis2.