kasperthystrup Goto Github PK
Name: Kasper Thystrup Karstensen
Type: User
Company: Statens serum Institut
Twitter: KasperThystrup
Name: Kasper Thystrup Karstensen
Type: User
Company: Statens serum Institut
Twitter: KasperThystrup
R package for setting up and performing circRNA analysis from hcimeric read output, generated by the STAR aligner.
This package provides a user interface for uploading, reprocessing and performing circRNA quantification and identification from raw fastq files.
This snakemake workflow imports a single fasta file with query sequences and blasts these against subject fasta files.
Git Source Code Mirror - This is a publish-only repository and all pull requests are ignored. Please follow Documentation/SubmittingPatches procedure for any of your improvements.
A Framework for Building Robust Shiny Apps
A snakemake workflow for automatically processing samples from NCBI GEO ID ids. This code is based on Tyler Weiricks pipeline for renaldb located here: https://bitbucket.org/tweirick/renaldb
Aggregate results from bioinformatics analyses across many samples into a single report.
PlasmidFinder in a snakemake pipeline.
A repository for a local setup of the RenalDB pipeline by Tyler Weirick at https://bitbucket.org/tweirick/renaldb
ResFinder snakemake workflow
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and RNA-seq workflows. Works equally easy with public as local data.
A small Shiny package for interactively select fastq files for STAR alignment. The package uses system commands to initiate STAR aligner
Mini app for STAR genome index generation
Fast, accurate taxonomic assignments for the human vaginal microbiota
Dataset for Unix introduction course
One-day Snakemake workshop.
A very small project (maybe future package) that aims to easily dispose of zero-inflation samples. Input data are gene (or Transcript) count tables, generated from RNA sequencing data.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.