katwre Goto Github PK

awesome-multi-omics

List of software packages for multi-omics analysis

awesome_spatial_omics

tools and notes for spatial omics

aws-for-bioinformatics

AWS for Bioinformatics Researchers

bimsbbioinfo.github.io

website for the platform

bioinformatics-projects

Collection of selected small bioinformatic projects

bioinformatics-social-meeting-september-27-2016

damefinder

Finds DAMEs - Differential Allelicly MEthylated regions

deep-learning-specialization-coursera

Deep Learning Specialization by Andrew Ng on Coursera.

devtools

Tools to make an R developer's life easier

fame

fastglm

Fast glm fitting via RcppEigen

genomation

R package for genomic feature analysis and visualization

igv-webapp

IGV Web App

internship_summary

katwre.github.io

Technical Portfolio

katwre_old.github.io

makewgbsnake

Snakemake pipeline for WGBS analysis (private repository)

meth_atlas

methylkit

R package for DNA methylation analysis

minesweeper

Minesweeper implemented in JAVA

ml-deep_learning

motifactivity

motifActivity: An R package for the computational reconstruction of transcription regulatory networks from high-throughput data

msa-vis-project

A django based server for MSA visualization - an internship project created by Katarzyna Wreczycka, Marta Stepniewska and Monika Maksymiuk.

other

phone_application

Phone application with django 1.5.1, manifesto app, localStorage

pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports

posters

pyreadr

Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.

rworkflows

Continuous integration for R packages. Automates testing, documentation website building, and containerised deployment.

scgpt