Comments (1)
Not sure. It was a long time ago since I wrote this code. plotTranscripts uses ggplot2 internally, which uses factor levels to set the order.
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Related Issues (12)
- Allow free scales for the read coverage plots. HOT 2
- Warn if the region that is being plotted is too wide to avoid running out of memory and crashing R.
- Filter classes were removed from ensembldb HOT 1
- log2 transformation HOT 3
- exon labeling HOT 2
- Plot transcripts from GTF HOT 2
- Allow region_coords in plotCoverage while rescale_introns = TRUE
- plotCoverage can't open BW files HOT 16
- plotCoverage for non cds region HOT 1
- Consider support for the D4 file format
- Set the Y-axis max value a little bit more than free-scale in coveragePlot
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