Comments (2)
@kvaldez I'm sorry for the delay. I can't replicate the problem. Is this still occurring? Do you have the latest version from Bioconductor multiMiR 1.6.0?
If it's not still occurring it's possible it was related to the load on the database server at the time. How long was the list of miRNAs? Each miRNA has so many predicted targets usually a long list of miRNAs doesn't work well and you are better off breaking the list up and merging the results if needed.
I will also look into size limits on the server/etc. It's possible this was the result of hitting some limit which wasn't hit by running just targetscan.
from multimir.
Hi @smahaffey , thank you for your reply.
When I install with BiocManager::install("multiMiR")
and then check the version with packageVersion("multiMir")
I am returned a version number of '1.4.0'. I think there may just be some misnumbering on the versions.
I broke my list up into smaller batches of miRNAs and the command ran fine, so I will use this method. Thank you for the suggestion!
from multimir.
Related Issues (20)
- Score integration
- connection refused in R HOT 3
- Error with “mmquery_bioc” HOT 1
- Can't load library(multiMiR) HOT 5
- Error with loading multiMiR HOT 2
- Failed to connect to multimir.org port 80: Connection refused HOT 2
- What the functional column does mean please HOT 2
- Issue with get_multimir: table = "predicted" HOT 5
- miRTarBase update request HOT 7
- Update Databases / Add New Databases HOT 11
- Failure when receiving data from the peer HOT 8
- TargetScan Prediction Score cutoff interpretation HOT 1
- deprecated 'as_data_frame()' HOT 2
- failure when library(multiMiR) HOT 1
- Gateway timeout HOT 1
- get_multimiR() nor working: get_multimiR may use as_data_frame(), which deprecated in tibble 2.0.0 for as_tibble() HOT 2
- error: Gateway Timeout when loading library HOT 5
- Mouse (mmu) getmultimir function not working? "invalid class “mmquery_bioc” object: invalid object for slot "summary" in class "mmquery_bioc"" HOT 5
- Is there a way to change cutoffs in the multimir-package without importing the files into R again? HOT 1
- Entrez IDs in results table match to multiple genes HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from multimir.