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Tom Kelly

Senior Researcher (H.U. Group) August 2021 - April 2024

Inactive account

Note that I will no longer have access to this account after I leave the company (@hugp-ri). Please use my personal account (@tomkellygenetics) to contact me about open-source projects.

Internal projects will be handed over to other members of my team.

Tom Kelly's Projects

hic2cool icon hic2cool

Lightweight converter between hic and cool contact matrices.

hic_tools icon hic_tools

A collection of tools for Hi-C data analysis

hicbricks icon hicbricks

HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.

hicup-plus icon hicup-plus

Hi-C data processing pipeline (with Dragen and HiSAT2 aligners)

spechla icon spechla

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events.

universc icon universc

UniverSC: a flexible cross-platform single-cell data processing pipeline

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