khp-informatics Goto Github PK

ade_ann

Artificial Neural Network Models for Adverse Drug Event Analytics

adhd_phone_app

adr-graph

Predicting adverse drug reactions from a knowledge graph

adrapp

alsgenescanner

alsmetaanalysis2020

This is the repository with the material from 2020 ALS GWAS

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

awesome-nextflow

A curated list of nextflow based pipelines

badges

:flower_playing_cards: Readme Badges – Gotta catch 'em all

bamutil

bayesian-logistic-regression-r-shiny-app

This repository contains a GUI written in Rshiny to perform Bayesian Logistic regression analysis in R. The interface is based on the MCMClogit function from the MCMCpack package.

bc-genetics

Workflows and tools for standard Genomic & Transcriptomic Analysis (SNP and Expression Arrays)

biodocker.github.io

Docker for Bioinformatics

bioindocker15

[Bio in Docker] Symposium 2015

bioperl-sfold

Bioperl Run wrappers for Sfold

bioperl-unafold

Bioperl wrapper, parser for Unafold

bioperl-wrapperbase-accessors

Autogeneration of accessors for parameters in bioperl wrappers

brc-bioinformatics-eccb-2014

Abstracts presented at ECCB 2014

brc-gate-applications

GATE applications used by the BRC on CRIS data

brc-gate-apps

brc-gate-lbd

brc-gate-pharmacotherapy

Pharmacotherapy GATE application used by the BRC on CRIS text

brc-u_git_template

The National Biomedical Research Centre Biomedical Research Centre and Dementia Unit (BRC/U) at South London and Maudsley NHS Foundation Trust and King’s College London

brc_mh_bioinformatics

Collection of pipelines, workflows and scripts for processing SNP and gene expression arrays and NGS data

cbits_question_app

cellprofile-r

An interface in R to CellProfiler and CellProfiler Analyst databases: CellProfiler (CP) and CellProfiler Analyst(CPA) are tools for analysing image sets of cells. The software is designed to enable biologists to easily quantify phenotypes from thousands of images automatically. CellProfileR, an R package for the statistical programming environment R, enables the users of CP/CPA to easily interface their databases (mysql, sqlite, csv) with R through generic methods. This is particularly useful where more sophisticated downstream analyses are required. Convenience functions and a number of workflows are provided. Additional feature suggestions are welcome.

cellprofiler

An open-source application for biological image analysis

chip_gt

Pipeline for running Rare Genotype Callers Zcall (Broad) and Opticall (Sanger) on Illumina Exome Chips to improve on standard Genome Studio Gencall calls

chip_gx

Illumina Chip based Gene Expression Pipeline (QC, Normalization, Differential Expression)

christie-deid

A de-identification algorithm to remove personal identifiable information from free text clinical narratives.