Name: Kristina Ibáñez Garikano
Type: User
Company: Queen Mary University London
Bio: PhD in Bioinformatics and AI-ML. Clinical bioinformatics. Rare diseases. Cancer. WES. WGS. CNVS. STRs. Somatic mosaicism. Benchmarking. Data wrangling
Location: London
Kristina Ibáñez Garikano's Projects
Scripts to digest analyses coming from STRs
Documentation for the ANNOVAR software
Scripts for analysing long-read sequencing data (nanopore/pacbio)
a large copy number variation detection algorithm using read-depth of coverage in targeted panels of genes
a somatic mosaic variants detection approach
Platypus Variant Caller
Pipeline for preprocessing case and control cohorts before running any big analysis (i.e. CAF or GWAS)
preprocess_CAF project in python3 (epydemiology python library in use now)
Short tandem repeats detection from WGS
Python production scripts for analysing STRs data