kirovez Goto Github PK

-2019_-

Билеты для экзамена по биоинформатике (направление Садоводство)

allium_centromere_scripts

The repo contains scripts that were used to prepare the figures and to analyse data for Allium centromere characterization

blast_run_parse_mask

Python 3.4 script to run BLASTn and create 1) fasta file contained query sequences showed similarity to sbjct; 2) BLAST_MASK file with query sequences with masked 'n' regions participated in alignment; 3) fasta file of queries which did not show similarity; 4) HIT fasta file contained parts of sequences participated in alignment.

canscode

deeps2bam_converter

drawid

This repository contains DRAWIDv0.26 source code and compiled binary

eccstructont

The repository contains scripts for analysis of Nanopore sequencing of eccDNA.

exam2018

scrip_new

genomeediting

golang_progs

This repo contains some programs written in Golang language to speed up the process

iraper

iRAPer is a pipeline for retrotransposon-based marker development using whole genome sequencing data

kirov.github.io

kirovez

Config files for my GitHub profile.

ltr-rte-analysis

mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

nanocaste

nanodj

NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly

nanotei

A pipeline for detection of non-reference transposon insertions using Nanopore data

nanotrf

A pipeline for detection and annotation of tandem repeats in raw nanopore reads

nanowgste

odb

OneDayScienceBot

primertespecific

python scripts to design specific primers for transposons

proteasesiteprediction

This repository contains two scripts, PeptideCutterParser.py and cleavegeProtein.py, that help to predict site cleavege for proteinases from MEROPS database and PeptideCutter tool

pytanfinder

Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results

rawscripts

repeatexplorer_scripts

The repository contains python scripts that we used to prepare NGS reads for RE2 run and to treat the results.

scripts_sorfs_ms

A collection of python scripts for the sORF MS

secretome

Scripts that were used to analyse secretome and cellular peptidome data after MeJa treatment

snake

st2_pipeline