PDF Builds but Incorrectly (Improperly placed Chapter Titles and Blank References)

[dalabre]

PDF Builds but Incorrectly (Improperly placed Chapter Titles and Blank References)

[ndellingwood]

Regarding (2), try running pdflatex Kokkos_PG a few times consecutively if you have not tried this yet.

On my Mac laptop with TeXShop I've been having some issues compiling with pdflatex directly. The work-around I have is the following:

1. open the tex file in TeXShop
2. press 'Typeset' a couple times (might leave behind ?'s etc)
3. in the drop-down menu that defaults to 'LaTeX' I change it to 'BibTeX', press 'Typeset'.
4. change the drop-down menu back to 'LaTeX' and press 'Typeset' a couple more times.

It's a very, very clunky workaround, but I have not written enough Latex lately to worry about investing time to figure out / fix the issue. If it turns out you're having similar issues maybe this will help as a temporary workaround, at least regarding the in-document references.