korflab Goto Github PK

ago

algorithms

assemblathon

Code that was used in the Assemblathon 1 and 2 projects

boggleome

A fun algorithmic challenge

c9

cegma_v2

The final version 2 release of our software to detect core genes in eukaryotic genomes

cegma_v3

CEGMA (Core Eukaryotic Genes Mapping Approach), for building a highly reliable set of gene annotations in the absence of experimental data.

centromere_repeat_paper

Code used to generate data for our analysis of centromeric repeats

datacore

Standardized protocols and datasets for some model organisms

diseasy

documenation

Testing various documentation systems

duphmm

An easy to use hidden Markov model-based copy number variant identifier

exam

Bioinformatics Exam

frag_project

To contain code and data files for the Fragmentation project, investigating shattered chromosome phenotypes in Arabidopsis thaliana

gc_cluster_manual

Documentation about how to use the UC Davis Genome Center compute cluster

gendl

Genomic experiments in Deep Learning

genesmith

Gene finder mixing genomic and protein information

genomikon

Genomic sequence analysis library & apps

grimoire

Biological sequence analysis tools

grimoire2

hmmstar-perl

Perl modules for HMMs (training mostly)

ime

A new code base for the IME project.

imeter

2022 reboot of IME project

julie

Bioinformatics experiments with Julia

korflab.github.io

languages

An exploration of different languages

learngit

Let's Learn Git

learning-c

learning-conda

learning-go