koustav-pal Goto Github PK

arrow

Apache Arrow is a columnar in-memory analytics layer designed to accelerate big data. It houses a set of canonical in-memory representations of flat and hierarchical data along with multiple language-bindings for structure manipulation. It also provides IPC and common algorithm implementations.

bioconda-recipes

Conda recipes for the bioconda channel.

chic

ChIC: ChIP-seq quality Control package

csen-marketing

d3

A JavaScript visualization library for HTML and SVG.

data_challenge

distiller-nf

a modular Hi-C mapping pipeline

ember.js

Ember.js - A JavaScript framework for creating ambitious web applications

feather

Feather: fast, interoperable binary data frame storage for Python, R, and more powered by Apache Arrow

gexf-js

A JavaScript GEXF viewer

go

The Open Source Data Science Masters

hic

Analysis of Chromosome Conformation Capture data (Hi-C)

hic_tools

A collection of tools for Hi-C data analysis

hicbricks

HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.

homebrew-r-multiverse

jquery

jQuery JavaScript Library

juicebox

Software for visualizing data from Hi-C and other proximity mapping experiments

juicebox-1

Visualization and analysis software for Hi-C data -

kentutils

UCSC command line bioinformatic utilities

koustav-pal.github.io

markdownlight

Markdown syntax highlighting plugin and color scheme for Sublime Text 3

nf-core-hic-dsl2

nf-mappable-coverage

Mappable coverage computation from bed files

nfcore-circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

osxfuse

FUSE for OS X extends OS X by adding support for FUSE file systems

personal-puzzles

Some puzzles to keep my mind fresh

renv

Simple R version management, based on rbenv

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sigma.js

A JavaScript library dedicated to graph drawing

superstr

A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.